Pakket: bifrost (1.3.5-2 en anderen)

[ Bron: bifrost  ]

parallel construction, indexing and querying of de Bruijn graphs

Bifrost is a command-line tool for sequencing that features a broad range of functions, such as indexing, editing, and querying the graph, and includes a graph coloring method that maps each k-mer of the graph to the genomes it occurs in.

 * Build, index, color and query the compacted de Bruijn graph
 * No need to build the uncompacted de Bruijn graph
 * Reads or assembled genomes as input
 * Output graph in GFA (can be visualized with Bandage), FASTA or binary
 * Graph cleaning: short tip clipping, etc.
 * Multi-threaded
 * No parameters to estimate with other tools
 * Exact or approximate k-mer search of queries

Andere aan bifrost gerelateerde pakketten

• dep: libbifrost0 (>= 1.3.1) [ia64]

  library for parallel construction, indexing and querying of de Bruijn graphs

  dep: libbifrost0 (>= 1.3.5) [niet ia64]

• dep: libc6 (>= 2.38) [niet alpha, ia64, loong64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.42) [loong64]

• dep: libc6.1 (>= 2.37) [ia64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.38) [alpha]

• dep: libgcc-s1 (>= 3.0) [niet alpha, ia64, riscv64, sparc64]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64]

  dep: libgcc-s1 (>= 4.2) [ia64]

  dep: libgcc-s1 (>= 4.3) [sparc64]

• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ Library v3

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: zlib1g (>= 1:1.1.4)

  compressiebibliotheek - programma's

bifrost downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	1.3.5-2	511,2 kB	1.369,0 kB	[overzicht]
amd64	1.3.5-2	533,0 kB	1.310,0 kB	[overzicht]
arm64	1.3.5-2	504,5 kB	1.238,0 kB	[overzicht]
ia64 (unofficial port)	1.3.1-1	563,5 kB	1.966,0 kB	[overzicht]
loong64	1.3.5-2	514,2 kB	1.237,0 kB	[overzicht]
ppc64 (unofficial port)	1.3.5-2	545,9 kB	1.494,0 kB	[overzicht]
ppc64el	1.3.5-2	548,9 kB	1.430,0 kB	[overzicht]
riscv64	1.3.5-2	533,8 kB	1.014,0 kB	[overzicht]
s390x	1.3.5-2	552,2 kB	1.382,0 kB	[overzicht]
sparc64 (unofficial port)	1.3.5-2	501,6 kB	1.311,0 kB	[overzicht]