Pakket: libtfbs-perl (0.7.1+ds-3 en anderen)

[ Bron: libtfbs-perl  ]

scanning DNA sequence with a position weight matrix

The TFBS perl modules comprise a set of routines to interact with the Transfac and Jaspar databases that describe a special family of proteins, the transcription factors. These bind to genomic DNA to initiate (or prevent) the readout of a gene. Once multiple binding sites are known for a transcription factor, these are gathered in a single file and are aligned in order to find position-specific characteristica that might be used to predict such binding events in novel DNA sequences.

If you use TFBS in your work, please cite "Lenhard B., Wasserman W.W. (2002) TFBS: Computational framework for transcription factor binding site analysis. Bioinformatics 18:1135-1136".

Note: the TFBS perl module is no longer under active development. All the functionality can be found in the TFBSTools Bioconductor package; users are highly encouraged to switch. <http://bioconductor.org/packages/TFBSTools/>

Tags: Softwareontwikkeling: Ontwikkelen in Perl, Bibliotheken, Field: field::biology, field::biology:bioinformatics, Implemented in: C, implemented-in::perl, interface::commandline, Role: Development Library, Program

Andere aan libtfbs-perl gerelateerde pakketten

• dep: bioperl

  Perl tools for computational molecular biology

• dep: libc6 (>= 2.14) [amd64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.16) [x32]

  dep: libc6 (>= 2.17) [arm64]

  dep: libc6 (>= 2.22) [ppc64, ppc64el]

  dep: libc6 (>= 2.27) [riscv64]

  dep: libc6 (>= 2.37) [sh4]

  dep: libc6 (>= 2.7) [armel, armhf, hppa, i386, m68k, mips64el, s390x, sparc64]

• dep: libc6.1 (>= 2.37) [ia64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.7) [alpha]

• dep: libdbi-perl

  Perl Database Interface (DBI)

• dep: libwww-perl

  simple and consistent interface to the world-wide web

• dep: pdl (>= 1:2.054-1) [alpha]

  perl data language: Perl extensions for numerics

  dep: pdl (>= 1:2.085-1) [ia64]

  dep: pdl (>= 1:2.085-1+b1) [niet alpha, hppa, ia64, m68k, sh4]

  dep: pdl (>= 1:2.087-1) [m68k, sh4]

  dep: pdl (>= 1:2.088-2) [hppa]

• dep: pdlapi-15 [alpha]

  virtueel pakket geboden door pdl

• dep: pdlapi-20 [niet alpha]

  virtueel pakket geboden door pdl

• dep: perl [alpha]

  Larry Wall's Practical Extraction and Report Language

  dep: perl (>= 5.38.2-3.2) [niet alpha, armhf, hppa, m68k, sh4]

  dep: perl (>= 5.38.2-3.2+b1) [armhf, hppa, m68k, sh4]

• dep: perlapi-5.32.1 [alpha]

  Pakket niet beschikbaar

• dep: perlapi-5.38.2 [niet alpha, armel, armhf, hppa, m68k, sh4, x32]

  virtueel pakket geboden door perl-base

• dep: perlapi-5.38.2t64 [armel, armhf, hppa, m68k, sh4, x32]

  virtueel pakket geboden door perl-base

• rec: libgd-gd2-perl

  virtueel pakket geboden door libgd-perl

  of libgd-gd2-noxpm-perl

  virtueel pakket geboden door libgd-perl

libtfbs-perl downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	0.7.1+ds-1	229,0 kB	992,0 kB	[overzicht]
amd64	0.7.1+ds-3	216,5 kB	979,0 kB	[overzicht]
arm64	0.7.1+ds-3	216,8 kB	1.027,0 kB	[overzicht]
armel	0.7.1+ds-3	217,6 kB	979,0 kB	[overzicht]
armhf	0.7.1+ds-3	215,8 kB	975,0 kB	[overzicht]
hppa (unofficial port)	0.7.1+ds-3	217,1 kB	980,0 kB	[overzicht]
i386	0.7.1+ds-3	217,1 kB	979,0 kB	[overzicht]
ia64 (unofficial port)	0.7.1+ds-3	218,4 kB	985,0 kB	[overzicht]
m68k (unofficial port)	0.7.1+ds-3	215,8 kB	979,0 kB	[overzicht]
mips64el	0.7.1+ds-3	216,6 kB	1.028,0 kB	[overzicht]
ppc64 (unofficial port)	0.7.1+ds-3	217,8 kB	1.027,0 kB	[overzicht]
ppc64el	0.7.1+ds-3	217,4 kB	1.027,0 kB	[overzicht]
riscv64	0.7.1+ds-3	217,0 kB	975,0 kB	[overzicht]
s390x	0.7.1+ds-3	216,8 kB	979,0 kB	[overzicht]
sh4 (unofficial port)	0.7.1+ds-3	216,8 kB	1.027,0 kB	[overzicht]
sparc64 (unofficial port)	0.7.1+ds-3	216,6 kB	1.989,0 kB	[overzicht]
x32 (unofficial port)	0.7.1+ds-3	216,4 kB	979,0 kB	[overzicht]