Pakket: libjellyfish-perl (2.3.1-3 en anderen)

[ Bron: jellyfish  ]

count k-mers in DNA sequences (Perl bindings of jellyfish)

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

This package contains the Perl bindings of jellyfish.

Tags: Softwareontwikkeling: Ontwikkelen in Perl, Bibliotheken, Implemented in: implemented-in::c, implemented-in::perl, Role: Development Library

Andere aan libjellyfish-perl gerelateerde pakketten

• dep: libc6 (>= 2.34) [niet ia64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libc6.1 (>= 2.31) [ia64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

• dep: libgcc-s1 (>= 3.0) [niet hppa, ia64]

  GCC support bibliotheek

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support bibliotheek

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: perl [ia64]

  Larry Wall's Practical Extraction and Report Language

  dep: perl (>= 5.38.2-2) [hppa]

  dep: perl (>= 5.38.2-3.2+b2) [niet hppa, ia64]

• dep: perlapi-5.32.1 [ia64]

  Pakket niet beschikbaar

• dep: perlapi-5.38.2 [niet ia64]

  virtueel pakket geboden door perl-base

libjellyfish-perl downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	2.3.1-3+b3	55,0 kB	177,0 kB	[overzicht]
arm64	2.3.1-3+b3	49,9 kB	229,0 kB	[overzicht]
hppa (unofficial port)	2.3.1-2+b1	65,9 kB	219,0 kB	[overzicht]
ia64 (unofficial port)	2.3.0-12	67,0 kB	299,0 kB	[overzicht]
mips64el	2.3.1-3+b4	48,5 kB	234,0 kB	[overzicht]
ppc64el	2.3.1-3+b4	54,0 kB	229,0 kB	[overzicht]
riscv64	2.3.1-3+b4	54,9 kB	153,0 kB	[overzicht]