Pakket: ngmlr (0.2.7+git20210816.a2a31fb+dfsg-2 en anderen)

Verwijzigingen voor ngmlr

Debian bronnen:

Het bronpakket ngmlr downloaden:

Beheerders:

Externe bronnen:

Homepage [github.com]

Vergelijkbare pakketten:

CoNvex Gap-cost alignMents for Long Reads

Ngmlr is a long-read mapper designed to sensitively align PacBilo or Oxford Nanopore to (large) reference genomes. It was designed to quickly and correctly align the reads, including those spanning (complex) structural variations. Ngmlr uses an SV aware k-mer search to find approximate mapping locations for a read and then a banded Smith- Waterman alignment algorithm to compute the final alignment. Ngmlr uses a convex gap cost model that penalizes gap extensions for longer gaps less than for shorter ones to compute precise alignments.

Andere aan ngmlr gerelateerde pakketten

depends

recommends

suggests

enhances

dep: libc6 (>= 2.29) [m68k, ppc64, sparc64, x32]

GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6-udeb

dep: libc6 (>= 2.32) [sh4]

dep: libc6 (>= 2.34) [niet alpha, ia64, m68k, ppc64, sh4, sparc64, x32]
dep: libc6.1 (>= 2.29) [alpha]

GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6.1-udeb

dep: libc6.1 (>= 2.32) [ia64]
dep: libgcc-s1 (>= 3.0) [amd64, arm64, mips64el, ppc64, ppc64el, s390x, x32]

GCC support bibliotheek

dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sparc64]

dep: libgcc-s1 (>= 3.5) [armel, armhf]

dep: libgcc-s1 (>= 4.2) [i386, ia64, sh4]
dep: libgcc-s2 (>= 4.2.1) [m68k]

GCC support bibliotheek
dep: libssw0 (>= 1.1)

fast SIMD parallelized implementation of the Smith-Waterman algorithm
dep: libstdc++6 (>= 11) [niet riscv64]

GNU Standard C++ Library v3

dep: libstdc++6 (>= 13.1) [riscv64]
dep: libunwind8 [ia64]

library to determine the call-chain of a program - runtime
dep: zlib1g (>= 1:1.1.4)

compressiebibliotheek - programma's

ngmlr downloaden

Pakket downloaden voor alle beschikbare platforms
Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	0.2.7+git20210816.a2a31fb+dfsg-2	671,9 kB	1.238,0 kB	[overzicht]
amd64	0.2.7+git20210816.a2a31fb+dfsg-2+b1	673,7 kB	1.157,0 kB	[overzicht]
arm64	0.2.7+git20210816.a2a31fb+dfsg-2+b1	653,3 kB	1.173,0 kB	[overzicht]
armel	0.2.7+git20210816.a2a31fb+dfsg-2+b1	648,7 kB	1.172,0 kB	[overzicht]
armhf	0.2.7+git20210816.a2a31fb+dfsg-2+b1	649,2 kB	1.044,0 kB	[overzicht]
i386	0.2.7+git20210816.a2a31fb+dfsg-2+b1	680,7 kB	1.184,0 kB	[overzicht]
ia64 (unofficial port)	0.2.7+git20210816.a2a31fb+dfsg-2	715,8 kB	1.608,0 kB	[overzicht]
m68k (unofficial port)	0.2.7+git20210816.a2a31fb+dfsg-2	661,5 kB	1.171,0 kB	[overzicht]
mips64el	0.2.7+git20210816.a2a31fb+dfsg-2+b1	657,3 kB	1.260,0 kB	[overzicht]
ppc64 (unofficial port)	0.2.7+git20210816.a2a31fb+dfsg-2	673,7 kB	1.300,0 kB	[overzicht]
ppc64el	0.2.7+git20210816.a2a31fb+dfsg-2+b1	677,5 kB	1.301,0 kB	[overzicht]
riscv64	0.2.7+git20210816.a2a31fb+dfsg-2+b1	669,3 kB	1.077,0 kB	[overzicht]
s390x	0.2.7+git20210816.a2a31fb+dfsg-2+b1	655,1 kB	1.173,0 kB	[overzicht]
sh4 (unofficial port)	0.2.7+git20210816.a2a31fb+dfsg-2	693,8 kB	1.132,0 kB	[overzicht]
sparc64 (unofficial port)	0.2.7+git20210816.a2a31fb+dfsg-2	648,4 kB	1.168,0 kB	[overzicht]
x32 (unofficial port)	0.2.7+git20210816.a2a31fb+dfsg-2	669,3 kB	1.127,0 kB	[overzicht]