Pakket: libjellyfish-2.0-dev (2.3.1-3 en anderen)

[ Bron: jellyfish  ]

count k-mers in DNA sequences (development files of jellyfish)

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

This package contains the development files (static library and header files)

Tags: Softwareontwikkeling: Bibliotheken, Role: Development Library

Andere aan libjellyfish-2.0-dev gerelateerde pakketten

• dep: libjellyfish-2.0-2 (= 2.3.0-12) [ia64]

  count k-mers in DNA sequences (dynamic library of jellyfish)

  dep: libjellyfish-2.0-2 (= 2.3.1-2+b1) [hppa]

  dep: libjellyfish-2.0-2 (= 2.3.1-3+b3) [amd64, arm64]

  dep: libjellyfish-2.0-2 (= 2.3.1-3+b4) [mips64el, ppc64el, riscv64]

libjellyfish-2.0-dev downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	2.3.1-3+b3	134,8 kB	691,0 kB	[overzicht]
arm64	2.3.1-3+b3	132,8 kB	694,0 kB	[overzicht]
hppa (unofficial port)	2.3.1-2+b1	134,3 kB	627,0 kB	[overzicht]
ia64 (unofficial port)	2.3.0-12	150,5 kB	825,0 kB	[overzicht]
mips64el	2.3.1-3+b4	140,4 kB	777,0 kB	[overzicht]
ppc64el	2.3.1-3+b4	140,9 kB	725,0 kB	[overzicht]
riscv64	2.3.1-3+b4	265,7 kB	2.255,0 kB	[overzicht]