Pakket: jellyfish (2.3.1-4 en anderen)

[ Bron: jellyfish  ]

count k-mers in DNA sequences

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

Andere aan jellyfish gerelateerde pakketten

• dep: libc6 (>= 2.34) [hppa]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.38) [niet hppa, ia64, loong64]

  dep: libc6 (>= 2.40) [loong64]

• dep: libc6.1 (>= 2.31) [ia64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

• dep: libgcc-s1 (>= 3.0) [niet hppa, ia64, riscv64]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4) [riscv64]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support bibliotheek

• dep: libhts3 (>= 1.10) [ia64]

  C library for high-throughput sequencing data formats

  dep: libhts3 (>= 1.17) [hppa]

• dep: libhts3t64 (>= 1.17) [niet hppa, ia64]

  C library for high-throughput sequencing data formats

• dep: libjellyfish-2.0-2 (= 2.3.0-12) [ia64]

  count k-mers in DNA sequences (dynamic library of jellyfish)

  dep: libjellyfish-2.0-2 (= 2.3.1-2+b1) [hppa]

  dep: libjellyfish-2.0-2 (= 2.3.1-4+b1) [niet hppa, ia64]

• dep: libstdc++6 (>= 13.1) [hppa]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 14) [niet hppa, ia64]

  dep: libstdc++6 (>= 9) [ia64]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

jellyfish downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	2.3.1-4+b1	788,6 kB	2.527,0 kB	[overzicht]
arm64	2.3.1-4+b1	709,1 kB	2.511,0 kB	[overzicht]
hppa (unofficial port)	2.3.1-2+b1	682,7 kB	2.079,0 kB	[overzicht]
ia64 (unofficial port)	2.3.0-12	847,7 kB	5.022,0 kB	[overzicht]
loong64 (unofficial port)	2.3.1-4+b1	722,6 kB	2.447,0 kB	[overzicht]
mips64el	2.3.1-4+b1	665,5 kB	3.082,0 kB	[overzicht]
ppc64el	2.3.1-4+b1	746,0 kB	2.895,0 kB	[overzicht]
riscv64	2.3.1-4+b1	755,3 kB	1.963,0 kB	[overzicht]