Pakket: miniasm (0.3+dfsg-4) [debports]

[ Bron:  ]

ultrafast de novo assembler for long noisy DNA sequencing reads

Miniasm is an experimental very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream assemblers, miniasm does not have a consensus step. It simply concatenates pieces of read sequences to generate the final unitig sequences. Thus the per-base error rate is similar to the raw input reads.

Andere aan miniasm gerelateerde pakketten

• dep: libc6.1 (>= 2.35)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

• dep: zlib1g (>= 1:1.1.4)

  compressiebibliotheek - programma's

• rec: minimap

  tool for approximate mapping of long biosequences such as DNA reads

miniasm downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
ia64 (unofficial port)	38,2 kB	113,0 kB	[overzicht]