Pakket: r-bioc-genomicfiles (1.38.0+dfsg-1)

[ Bron: r-bioc-genomicfiles  ]

Distributed computing by file or by range

This package provides infrastructure for parallel computations distributed 'by file' or 'by range'. User defined MAPPER and REDUCER functions provide added flexibility for data combination and manipulation.

Andere aan r-bioc-genomicfiles gerelateerde pakketten

• dep: r-api-4.0

  virtueel pakket geboden door r-base-core

• dep: r-api-bioc-3.18

  virtueel pakket geboden door r-bioc-biocgenerics

• dep: r-bioc-biocgenerics (>= 0.11.2)

  generic functions for Bioconductor

• dep: r-bioc-biocparallel (>= 1.1.0)

  BioConductor facilities for parallel evaluation

• dep: r-bioc-genomeinfodb

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-genomicalignments (>= 1.7.7)

  BioConductor representation and manipulation of short genomic alignments

• dep: r-bioc-genomicranges (>= 1.31.16)

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-matrixgenerics

  S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects

• dep: r-bioc-rsamtools (>= 1.17.29)

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

• dep: r-bioc-rtracklayer (>= 1.25.3)

  GNU R interface to genome browsers and their annotation tracks

• dep: r-bioc-s4vectors (>= 0.9.25)

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-summarizedexperiment

  BioConductor assay container

• dep: r-bioc-variantannotation (>= 1.27.9)

  BioConductor annotation of genetic variants

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-biostrings

  GNU R string objects representing biological sequences

• sug: r-bioc-genefilter

  methods for filtering genes from microarray experiments

• sug: r-bioc-snpstats

  BioConductor SnpMatrix and XSnpMatrix classes and methods

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-runit

  GNU R package providing unit testing framework

r-bioc-genomicfiles downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
all	522,6 kB	789,0 kB	[overzicht]