Pakket: dascrubber (1.1-4 en anderen)

[ Bron: dascrubber  ]

alignment-based scrubbing pipeline for DNA sequencing reads

The Dazzler Scrubbing Suite produces a set of edited reads that are guaranteed to

 * be continuous stretches of the underlying genome (i.e. no unremoved
   adapters and not chimers)
 * have no very low quality stretches (i.e. the error rate never exceeds some
   reasonable maximum, 20% or so in the case of Pacbio data).

Its secondary goal is to do so with the minimum removal of data and splitting of reads.

Andere aan dascrubber gerelateerde pakketten

• dep: libc6 (>= 2.16) [x32]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.31) [sh4]

  dep: libc6 (>= 2.34) [riscv64]

  dep: libc6 (>= 2.7) [niet alpha, arm64, ia64, ppc64el, riscv64, sh4, x32]

• dep: libc6.1 (>= 2.31) [ia64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.7) [alpha]

• sug: daligner

  local alignment discovery between long nucleotide sequencing reads

• sug: dazzdb

  manage nucleotide sequencing read data

dascrubber downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	1.1-4	159,8 kB	1.381,0 kB	[overzicht]
amd64	1.1-4	163,9 kB	1.185,0 kB	[overzicht]
arm64	1.1-4	141,9 kB	1.113,0 kB	[overzicht]
armel	1.1-4	139,8 kB	1.139,0 kB	[overzicht]
armhf	1.1-4	137,6 kB	803,0 kB	[overzicht]
hppa (unofficial port)	1.1-4	150,4 kB	1.169,0 kB	[overzicht]
i386	1.1-4	157,6 kB	1.327,0 kB	[overzicht]
ia64 (unofficial port)	1.1-4	185,4 kB	2.282,0 kB	[overzicht]
m68k (unofficial port)	1.1-4	141,1 kB	1.139,0 kB	[overzicht]
mips64el	1.1-4	135,7 kB	1.217,0 kB	[overzicht]
ppc64 (unofficial port)	1.1-4	154,2 kB	1.725,0 kB	[overzicht]
ppc64el	1.1-4	165,7 kB	1.789,0 kB	[overzicht]
riscv64	1.1-4+b1	166,3 kB	930,0 kB	[overzicht]
s390x	1.1-4	155,1 kB	1.237,0 kB	[overzicht]
sh4 (unofficial port)	1.1-4	159,6 kB	999,0 kB	[overzicht]
sparc64 (unofficial port)	1.1-4	130,1 kB	1.159,0 kB	[overzicht]
x32 (unofficial port)	1.1-4	158,9 kB	1.151,0 kB	[overzicht]