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Pakket: tree-puzzle (5.2-11)

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Reconstruction of phylogenetic trees by maximum likelihood

TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Supports Format: Plain Text, Works with: Need an extra tag

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Pakket downloaden voor alle beschikbare platforms
Platform Pakketgrootte Geïnstalleerde grootte Bestanden
amd64 132,9 kB313,0 kB [overzicht]
arm64 127,1 kB317,0 kB [overzicht]
armel 128,8 kB325,0 kB [overzicht]
armhf 121,2 kB241,0 kB [overzicht]
i386 134,3 kB333,0 kB [overzicht]
mips 131,8 kB353,0 kB [overzicht]
mips64el 133,8 kB368,0 kB [overzicht]
mipsel 133,5 kB353,0 kB [overzicht]
ppc64el 139,7 kB362,0 kB [overzicht]
s390x 125,0 kB333,0 kB [overzicht]