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Pakket: tree-ppuzzle (5.2-11)

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Parallelized reconstruction of phylogenetic trees by maximum likelihood

TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment.

This is the parallelized version of tree-puzzle.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Supports Format: Plain Text, Works with: Need an extra tag

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Pakket downloaden voor alle beschikbare platforms
Platform Pakketgrootte Geïnstalleerde grootte Bestanden
amd64 148,4 kB345,0 kB [overzicht]
arm64 142,4 kB353,0 kB [overzicht]
armel 143,1 kB361,0 kB [overzicht]
armhf 135,8 kB269,0 kB [overzicht]
i386 150,4 kB381,0 kB [overzicht]
mips 147,1 kB395,0 kB [overzicht]
mips64el 148,7 kB415,0 kB [overzicht]
mipsel 148,8 kB395,0 kB [overzicht]
ppc64el 155,8 kB426,0 kB [overzicht]
s390x 140,7 kB377,0 kB [overzicht]