Pakket: theseus (3.3.0-8)

[ Bron: theseus  ]

superimpose macromolecules using maximum likelihood

Theseus is a program that simultaneously superimposes multiple macromolecular structures. Theseus finds the optimal solution to the superposition problem using the method of maximum likelihood. By down-weighting variable regions of the superposition and by correcting for correlations among atoms, the ML superposition method produces very accurate structural alignments.

When macromolecules with different residue sequences are superimposed, other programs and algorithms discard residues that are aligned with gaps. Theseus, however, uses a novel superimposition algorithm that includes all of the data.

Tags: Biology: Proteins, Field: Biology, field::biology:bioinformatics, field::biology:structural, Implemented in: C, User Interface: interface::commandline, role::program, Purpose: Analysing, use::comparing, works-with-format::plaintext

Andere aan theseus gerelateerde pakketten

• dep: clustalo

  General purpose multiple sequence alignment program for proteins

• dep: libc6 (>= 2.15) [armhf, i386]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.17) [arm64]

  dep: libc6 (>= 2.22) [amd64]

• dep: libgsl23 (>= 2.5)

  GNU Scientific Library (GSL) -- library package

• dep: libgslcblas0 (>= 2.4)

  GNU Scientific Library (GSL) -- blas library package

• dep: muscle

  Multiple alignment program of protein sequences

• sug: clustalw

  global multiple nucleotide or peptide sequence alignment

• sug: dialign

  Segment-based multiple sequence alignment

• sug: kalign

  Global and progressive multiple sequence alignment

• sug: mafft

  Multiple alignment program for amino acid or nucleotide sequences

• sug: probcons

  PROBabilistic CONSistency-based multiple sequence alignment

• sug: t-coffee

  Multiple Sequence Alignment

• sug: theseus-examples

  superimpose macromolecules using maximum likelihood (examples)

theseus downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	384,0 kB	1.003,0 kB	[overzicht]
arm64	340,2 kB	807,0 kB	[overzicht]
armhf	272,3 kB	582,0 kB	[overzicht]
i386	284,2 kB	825,0 kB	[overzicht]