Pakket: mptp (0.2.4-3)

[ Bron: mptp  ]

single-locus species delimitation

Implementation of a fast species delimitation method, based on PTP (Zhang et al. 2013) with a 64-bit multi-threaded design that handles very large datasets.

The tool mPTP can handle very large biodiversity datasets. It implements a fast method to compute the ML delimitation from an inferred phylogenetic tree of the samples. Using MCMC, it also computes the support values for each clade, which can be used to assess the confidence of the ML delimitation.

ML delimitation mPTP implements two flavours of the point-estimate solution. First, it implements the original method from (Zhang et al. 2013) where all within-species processes are modelled with a single exponential distribution. mPTP uses a dynamic programming implementation which estimates the ML delimitation faster and more accurately than the original PTP. The dynamic programming implementation has similar properties as (Gulek et al. 2010). See the wiki for more information. The second method assumes a distinct exponential distribution for the branching events of each of the delimited species allowing it to fit to a wider range of empirical datasets.

MCMC method mPTP generates support values for each clades. They represent the ratio of the number of samples for which a particular node was in the between-species process, to the total number of samples.

Andere aan mptp gerelateerde pakketten

• dep: libc6 (>= 2.29)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libgsl25 (>= 2.6)

  GNU Scientific Library (GSL) -- library package

• rec: bash-completion

  programmable completion for the bash shell

mptp downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	75,2 kB	269,0 kB	[overzicht]
arm64	72,2 kB	269,0 kB	[overzicht]
armel	72,4 kB	264,0 kB	[overzicht]
armhf	69,9 kB	236,0 kB	[overzicht]
i386	78,3 kB	275,0 kB	[overzicht]
mips64el	75,4 kB	289,0 kB	[overzicht]
mipsel	75,0 kB	279,0 kB	[overzicht]
ppc64el	77,6 kB	297,0 kB	[overzicht]
s390x	73,2 kB	277,0 kB	[overzicht]