Pakket: mafft (7.475-1)

[ Bron: mafft  ]

Multiple alignment program for amino acid or nucleotide sequences

MAFFT is a multiple sequence alignment program which offers three accuracy-oriented methods:

 * L-INS-i (probably most accurate; recommended for <200 sequences;
   iterative refinement method incorporating local pairwise alignment
   information),
 * G-INS-i (suitable for sequences of similar lengths; recommended for
   <200 sequences; iterative refinement method incorporating global
   pairwise alignment information),
 * E-INS-i (suitable for sequences containing large unalignable regions;
   recommended for <200 sequences),

and five speed-oriented methods:

 * FFT-NS-i (iterative refinement method; two cycles only),
 * FFT-NS-i (iterative refinement method; max. 1000 iterations),
 * FFT-NS-2 (fast; progressive method),
 * FFT-NS-1 (very fast; recommended for >2000 sequences; progressive
   method with a rough guide tree),
 * NW-NS-PartTree-1 (recommended for ∼50,000 sequences; progressive
   method with the PartTree algorithm).

Tags: Biology: Clustal/ALN, Proteins, Field: field::biology, field::biology:bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::comparing, works-with-format::plaintext, Works with: Biological Sequence

Andere aan mafft gerelateerde pakketten

• dep: libc6 (>= 2.29)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• rec: blast2

  Pakket niet beschikbaar

• rec: libwww-perl

  simple and consistent interface to the world-wide web

• rec: lynx

  classic non-graphical (text-mode) web browser

• rec: ruby

  Interpreter of object-oriented scripting language Ruby (default version)

• enh: t-coffee

  Multiple Sequence Alignment

mafft downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	1.026,2 kB	11.507,0 kB	[overzicht]
arm64	900,9 kB	10.763,0 kB	[overzicht]
armel	893,9 kB	11.232,0 kB	[overzicht]
armhf	748,4 kB	7.644,0 kB	[overzicht]
i386	961,2 kB	12.752,0 kB	[overzicht]
mips64el	858,5 kB	12.805,0 kB	[overzicht]
mipsel	913,4 kB	12.504,0 kB	[overzicht]
ppc64el	973,3 kB	15.693,0 kB	[overzicht]
s390x	875,0 kB	12.635,0 kB	[overzicht]