Pakket: kraken (1.1.1-2)

[ Bron: kraken  ]

assigning taxonomic labels to short DNA sequences

Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies. Previous attempts by other bioinformatics software to accomplish this task have often used sequence alignment or machine learning techniques that were quite slow, leading to the development of less sensitive but much faster abundance estimation programs. Kraken aims to achieve high sensitivity and high speed by utilizing exact alignments of k-mers and a novel classification algorithm.

In its fastest mode of operation, for a simulated metagenome of 100 bp reads, Kraken processed over 4 million reads per minute on a single core, over 900 times faster than Megablast and over 11 times faster than the abundance estimation program MetaPhlAn. Kraken's accuracy is comparable with Megablast, with slightly lower sensitivity and very high precision.

Andere aan kraken gerelateerde pakketten

• dep: jellyfish1

  count k-mers in DNA sequences

• dep: libc6 (>= 2.14) [amd64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.7) [niet amd64, arm64, ppc64el]

• dep: libgcc-s1 (>= 3.0) [niet armel, armhf, i386]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386]

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

kraken downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	736,7 kB	1.532,0 kB	[overzicht]
arm64	730,6 kB	1.492,0 kB	[overzicht]
armel	728,6 kB	1.462,0 kB	[overzicht]
armhf	729,8 kB	1.418,0 kB	[overzicht]
i386	743,1 kB	1.542,0 kB	[overzicht]
mips64el	737,3 kB	1.558,0 kB	[overzicht]
ppc64el	736,7 kB	1.772,0 kB	[overzicht]
s390x	730,5 kB	1.508,0 kB	[overzicht]