Pakket: ivar (1.3+dfsg-1)

[ Bron: ivar  ]

functions broadly useful for viral amplicon-based sequencing

iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing. Additional tools for metagenomic sequencing are actively being incorporated into iVar. While each of these functions can be accomplished using existing tools, iVar contains an intersection of functionality from multiple tools that are required to call iSNVs and consensus sequences from viral sequencing data across multiple replicates. iVar provided the following functions:

 1. trimming of primers and low-quality bases,
 2. consensus calling,
 3. variant calling - both iSNVs and insertions/deletions, and
 4. identifying mismatches to primer sequences and excluding the
    corresponding reads from alignment files.

Andere aan ivar gerelateerde pakketten

• dep: libc6 (>= 2.29)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libgcc-s1 (>= 3.0) [niet i386, mipsel]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 4.2) [i386, mipsel]

• dep: libhts3 (>= 1.10)

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 9)

  GNU Standard C++ Library v3

• rec: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

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Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	202,9 kB	1.614,0 kB	[overzicht]
arm64	191,3 kB	1.606,0 kB	[overzicht]
i386	217,8 kB	1.617,0 kB	[overzicht]
mips64el	266,0 kB	2.502,0 kB	[overzicht]
mipsel	264,8 kB	2.392,0 kB	[overzicht]