Pakket: gmap (2021-02-22+ds-1)

[ Bron: gmap  ]

spliced and SNP-tolerant alignment for mRNA and short reads

This package contains the programs GMAP and GSNAP as well as utilities to manage genome databases in GMAP/GSNAP format. GMAP (Genomic Mapping and Alignment Program) is a tool for aligning EST, mRNA and cDNA sequences. GSNAP (Genomic Short-read Nucleotide Alignment Program) is a tool for aligning single-end and paired-end transcriptome reads. Both tools can use a database of

 * known splice sites and identify novel splice sites.
 * known single-nucleotide polymorphisms (SNPs).

GSNAP can align bisulfite-treated DNA.

Tags: Field: Biology, field::biology:bioinformatics, field::biology:structural, Role: Program, Purpose: Analysing

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amd64	11.332,0 kB	86.543,0 kB	[overzicht]
arm64	6.976,6 kB	57.915,0 kB	[overzicht]
armel	5.605,3 kB	43.621,0 kB	[overzicht]
armhf	5.756,4 kB	41.853,0 kB	[overzicht]
i386	5.907,0 kB	43.773,0 kB	[overzicht]
mips64el	5.324,5 kB	54.666,0 kB	[overzicht]
mipsel	5.291,6 kB	45.235,0 kB	[overzicht]
ppc64el	7.219,0 kB	60.727,0 kB	[overzicht]