Pakket: examl (3.0.22-1 en anderen)

[ Bron: examl  ]

Exascale Maximum Likelihood (ExaML) code for phylogenetic inference

Exascale Maximum Likelihood (ExaML) is a code for phylogenetic inference using MPI. This code implements the popular RAxML search algorithm for maximum likelihood based inference of phylogenetic trees.

ExaML is a strapped-down light-weight version of RAxML for phylogenetic inference on huge datasets. It can only execute some very basic functions and is intended for computer-savvy users that can write little perl-scripts and have experience using queue submission scripts for clusters. ExaML only implements the CAT and GAMMA models of rate heterogeneity for binary, DNA, and protein data.

ExaML uses a radically new MPI parallelization approach that yields improved parallel efficiency, in particular on partitioned multi-gene or whole-genome datasets. It also implements a new load balancing algorithm that yields better parallel efficiency.

It is up to 4 times faster than its predecessor RAxML-Light and scales to a larger number of processors.

Andere aan examl gerelateerde pakketten

• dep: libc6 (>= 2.29)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libopenmpi3 (>= 4.1.0)

  high performance message passing library -- shared library

• dep: openmpi-bin

  high performance message passing library -- binaries

examl downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	3.0.22-1+b4	905,5 kB	5.858,0 kB	[overzicht]
arm64	3.0.22-1+b4	780,4 kB	1.540,0 kB	[overzicht]
armel	3.0.22-1+b4	797,5 kB	1.873,0 kB	[overzicht]
armhf	3.0.22-1+b4	786,2 kB	1.513,0 kB	[overzicht]
i386	3.0.22-1+b4	1.084,5 kB	7.220,0 kB	[overzicht]
mips64el	3.0.22-1+b4	817,0 kB	1.764,0 kB	[overzicht]
mipsel	3.0.22-1+b4	830,1 kB	1.822,0 kB	[overzicht]
ppc64el	3.0.22-1+b4	833,7 kB	1.792,0 kB	[overzicht]
s390x	3.0.22-1+b4	816,0 kB	2.004,0 kB	[overzicht]