Pakket: pycoqc (2.5.2+dfsg-1)

[ Bron: pycoqc  ]

computes metrics and generates Interactive QC plots

PycoQC computes metrics and generates interactive QC plots for Oxford Nanopore technologies sequencing data

PycoQC relies on the sequencing_summary.txt file generated by Albacore and Guppy, but if needed it can also generates a summary file from basecalled fast5 files. The package supports 1D and 1D2 runs generated with Minion, Gridion and Promethion devices and basecalled with Albacore 1.2.1+ or Guppy 2.1.3+

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• dep: python3

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• dep: python3-h5py

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• dep: python3-h5py-serial

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• dep: python3-jinja2

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• dep: python3-numpy

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• dep: python3-pandas

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• dep: python3-plotly (>= 4.1.0)

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• dep: python3-pysam

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• dep: python3-scipy

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• dep: python3-tqdm

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Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
all	35,4 kB	195,0 kB	[overzicht]