Pakket: blixem (4.44.1+dfsg-6 en anderen)

[ Bron: seqtools  ]

interactive browser of sequence alignments

Blixem is an interactive browser of sequence alignments that have been stacked up in a "master-slave" multiple alignment; it is not a 'true' multiple alignment but a 'one-to-many' alignment.

 * Overview section showing the positions of genes and alignments around
   the alignment window
 * Detail section showing the actual alignment of protein or nucleotide
   sequences to the genomic DNA sequence.
 * View alignments against both strands of the reference sequence.
 * View sequences in nucleotide or protein mode; in protein mode, Blixem
   will display the three-frame translation of the reference sequence.
 * Residues are highlighted in different colours depending on whether
   they are an exact match, conserved substitution or mismatch.
 * Gapped alignments are supported, with insertions and deletions being
   highlighted in the match sequence.
 * Matches can be sorted and filtered.
 * SNPs and other variations can be highlighted in the reference
   sequence.
 * Poly(A) tails can be displayed and poly(A) signals highlighted in the
   reference sequence.

Tags: Interface Toolkit: GTK

Andere aan blixem gerelateerde pakketten

• dep: libc6 (>= 2.7)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libcairo2 (>= 1.2.4)

  Cairo 2D vector graphics library

• dep: libcurl4 (>= 7.16.2)

  easy-to-use client-side URL transfer library (OpenSSL flavour)

• dep: libgbtools0 (>= 4.44.1+dfsg)

  library for visualising sequence alignments

• dep: libgcc-s1 (>= 3.0)

  GCC support bibliotheek

• dep: libglib2.0-0 (>= 2.35.9)

  GLib library of C routines

• dep: libgtk2.0-0 (>= 2.14.0)

  GTK graphical user interface library - old version

• dep: libpango-1.0-0 (>= 1.14.0)

  Layout and rendering of internationalized text

• dep: libsqlite3-0 (>= 3.5.9)

  SQLite 3 shared library

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

blixem downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
mipsel	4.44.1+dfsg-6+b1	1.349,7 kB	2.561,0 kB	[overzicht]