Pakket: r-cran-spp (1.16.0-2)

[ Bron: r-cran-spp  ]

GNU R ChIP-seq processing pipeline

R package for anlaysis of ChIP-seq and other functional sequencing data

 * Assess overall DNA-binding signals in the data and select appropriate
   quality of tag alignment.
 * Discard or restrict positions with abnormally high number of tags.
 * Calculate genome-wide profiles of smoothed tag density and save them
   in WIG files for viewing in other browsers.
 * Calculate genome-wide profiles providing conservative statistical
   estimates of fold enrichment ratios along the genome. These can be
   exported for browser viewing, or thresholded to determine regions of
   significant enrichment/depletion.
 * Determine statistically significant point binding positions
 * Assess whether the set of point binding positions detected at a
   current sequencing depth meets saturation criteria, and if does not,
   estimate what sequencing depth would be required to do so.

Andere aan r-cran-spp gerelateerde pakketten

• dep: libbz2-1.0

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• dep: libc6 (>= 2.29)

  GNU C Bibliotheek: Gedeelde bibliotheken
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• dep: libgcc-s1 (>= 3.0) [niet armel, armhf]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libstdc++6 (>= 5.2)

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• dep: r-api-4.0

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• dep: r-base-core (>= 4.0.2-1)

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• dep: r-bioc-rsamtools

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• dep: r-cran-bh (>= 1.66)

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• dep: r-cran-catools

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• dep: r-cran-rcpp

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r-cran-spp downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	315,3 kB	453,0 kB	[overzicht]
arm64	309,7 kB	425,0 kB	[overzicht]
armel	309,8 kB	424,0 kB	[overzicht]
armhf	309,5 kB	391,0 kB	[overzicht]
i386	320,8 kB	459,0 kB	[overzicht]
mips64el	308,7 kB	452,0 kB	[overzicht]
mipsel	308,6 kB	454,0 kB	[overzicht]
ppc64el	317,2 kB	497,0 kB	[overzicht]
s390x	311,0 kB	444,0 kB	[overzicht]