Pakket: chip-seq (1.5.5-3)

[ Bron: chip-seq  ]

tools performing common ChIP-Seq data analysis tasks

The ChIP-Seq software provides a set of tools performing common genome- wide ChIP- seq analysis tasks, including positional correlation analysis, peak detection, and genome partitioning into signal-rich and signal-poor regions. These tools exist as stand-alone C programs and perform the following tasks:

 1. Positional correlation analysis and generation of an aggregation
    plot (AP) (chipcor),
 2. Extraction of specific genome annotation features around reference
    anchor points (chipextract),
 3. Read centering or shifting (chipcenter),
 4. Narrow peak caller using a fixed width peak size (chippeak),
 5. Broad peak caller used for large regions of enrichment (chippart),
 6. Feature selection tool based on a read count threshold (chipscore).

Because the ChIP-Seq tools are primarily optimized for speed, they use their own compact format for ChIP-seq data representation called SGA (Simplified Genome Annotation). SGA is a line-oriented, tab-delimited plain text format.

Andere aan chip-seq gerelateerde pakketten

• dep: chip-seq-data

  tools performing common ChIP-Seq data analysis tasks (data)

• dep: libc6 (>= 2.14) [amd64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.7) [niet amd64, arm64, ppc64el]

• dep: libmath-round-perl

  Perl extension for rounding numbers

chip-seq downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	98,7 kB	496,0 kB	[overzicht]
arm64	97,5 kB	456,0 kB	[overzicht]
armel	91,2 kB	418,0 kB	[overzicht]
armhf	90,3 kB	358,0 kB	[overzicht]
i386	98,1 kB	510,0 kB	[overzicht]
mips64el	99,7 kB	492,0 kB	[overzicht]
mipsel	94,5 kB	441,0 kB	[overzicht]
ppc64el	104,5 kB	1.040,0 kB	[overzicht]
s390x	93,0 kB	467,0 kB	[overzicht]