Pakket: bowtie2 (2.4.2-2 en anderen)

[ Bron: bowtie2  ]

ultrafast memory-efficient short read aligner

is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes.

Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes

Tags: Biology: Nucleic Acids, Field: Biology, field::biology:bioinformatics, implemented-in::c++, User Interface: Command Line, Role: role::program, use::comparing, Works with: Biological Sequence

Andere aan bowtie2 gerelateerde pakketten

• dep: libc6 (>= 2.29)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libgcc-s1 (>= 3.0) [niet amd64]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4) [amd64]

• dep: libstdc++6 (>= 9)

  GNU Standard C++ Library v3

• dep: libtbb2 (>= 2017~U7) [amd64]

  parallelism library for C++ - runtime files

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: zlib1g (>= 1:1.2.6)

  compressiebibliotheek - programma's

• sug: bowtie2-examples

  Examples for bowtie2

bowtie2 downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	2.4.2-2+b3	1.310,9 kB	5.305,0 kB	[overzicht]
arm64	2.4.2-2+b3	1.234,3 kB	4.591,0 kB	[overzicht]
mips64el	2.4.2-2+b2	1.294,0 kB	5.573,0 kB	[overzicht]
ppc64el	2.4.2-2+b3	1.386,5 kB	5.563,0 kB	[overzicht]