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Pakket: spaln (2.4.1+dfsg-3)

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splicing-aware transcript-alignment to genomic DNA

Spaln (space-efficient spliced alignment) is a stand-alone program that maps and aligns a set of cDNA or protein sequences onto a whole genomic sequence in a single job. It also performs spliced or ordinary alignment after rapid similarity search against a protein sequence database, if a genomic segment or an amino acid sequence is given as a query.

spaln supports a combination of protein sequence database and a given genomic segment and performs rapid similarity searches and (semi-)global alignments of a set of protein sequence queries against a protein sequence database. Spaln adopts multi-phase heuristics that makes it possible to perform the job on a conventional personal computer.

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Pakket downloaden voor alle beschikbare platforms
Platform Pakketgrootte Geïnstalleerde grootte Bestanden
amd64 345,1 kB855,0 kB [overzicht]
arm64 311,5 kB775,0 kB [overzicht]
armel 296,6 kB781,0 kB [overzicht]
armhf 303,3 kB589,0 kB [overzicht]
i386 349,5 kB881,0 kB [overzicht]
mips64el 330,2 kB955,0 kB [overzicht]
mipsel 323,5 kB895,0 kB [overzicht]
ppc64el 360,1 kB1.120,0 kB [overzicht]
s390x 349,1 kB1.003,0 kB [overzicht]