Pakket: r-bioc-demixt (1.14.0+dfsg-1)

[ Bron: r-bioc-demixt  ]

Cell type-specific deconvolution of heterogeneous tumor samples

When studying cancer cells from tumors excised from patients, the samples will be a mixture of tumors and healthy cells, e.g. from invading immune cells. For comparing samples, the interest may be more on comparing the transcriptome of the tumors themselves.

This package prepares the statistical separation (deconvolution) of RNAseq or microarray generated expression data for two or three components.

Andere aan r-bioc-demixt gerelateerde pakketten

• dep: libc6 (>= 2.29)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  GCC support bibliotheek

• dep: libgomp1 (>= 4.9)

  GCC OpenMP (GOMP) support library

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• dep: r-api-4.0

  virtueel pakket geboden door r-base-core

• dep: r-api-bioc-3.16

  virtueel pakket geboden door r-bioc-biocgenerics

• dep: r-base-core (>= 4.2.2.20221110-1)

  GNU R core of statistical computation and graphics system

• dep: r-bioc-dss

  Bioconductor dispersion shrinkage for sequencing data

• dep: r-bioc-summarizedexperiment

  BioConductor assay container

• dep: r-bioc-sva

  GNU R Surrogate Variable Analysis

• dep: r-cran-base64enc

  GNU R package that provides tools for base64 encoding

• dep: r-cran-dendextend

  Extending 'dendrogram' Functionality in GNU R

• dep: r-cran-ggplot2

  implementation of the Grammar of Graphics

• dep: r-cran-kernsmooth

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• dep: r-cran-knitr

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• dep: r-cran-matrixcalc

  GNU R functions for matrix calculations -- matrixcalc

• dep: r-cran-matrixstats

  GNU R methods that apply to rows and columns of a matrix

• dep: r-cran-psych

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• dep: r-cran-rcpp (>= 1.0.0)

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• dep: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• dep: r-cran-truncdist

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r-bioc-demixt downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
s390x	2.584,2 kB	3.128,0 kB	[overzicht]