Pakket: libjellyfish-perl (2.3.0-15 en anderen)

[ Bron: jellyfish  ]

count k-mers in DNA sequences (Perl bindings of jellyfish)

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

This package contains the Perl bindings of jellyfish.

Tags: Softwareontwikkeling: Ontwikkelen in Perl, Bibliotheken, Implemented in: implemented-in::c, implemented-in::perl, Role: Development Library

Andere aan libjellyfish-perl gerelateerde pakketten

• dep: libc6 (>= 2.34)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libgcc-s1 (>= 3.0) [niet armel, armhf]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: perl (>= 5.36.0-7)

  Larry Wall's Practical Extraction and Report Language

• dep: perlapi-5.36.0

  virtueel pakket geboden door perl-base

libjellyfish-perl downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	2.3.0-15+b3	53,0 kB	172,0 kB	[overzicht]
arm64	2.3.0-15+b3	48,4 kB	228,0 kB	[overzicht]
armel	2.3.0-15+b3	54,4 kB	174,0 kB	[overzicht]
armhf	2.3.0-15+b3	55,2 kB	138,0 kB	[overzicht]
i386	2.3.0-15+b3	62,1 kB	186,0 kB	[overzicht]
mips64el	2.3.0-15+b3	47,5 kB	234,0 kB	[overzicht]
ppc64el	2.3.0-15+b3	53,3 kB	228,0 kB	[overzicht]