Pakket: libvcflib-tools (1.0.3+dfsg-2)

[ Bron: libvcflib  ]

C++ library for parsing and manipulating VCF files (tools)

The Variant Call Format (VCF) is a flat-file, tab-delimited textual format intended to concisely describe reference-indexed variations between individuals. VCF provides a common interchange format for the description of variation in individuals and populations of samples, and has become the defacto standard reporting format for a wide array of genomic variant detectors.

vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. It is both:

 * an API for parsing and operating on records of genomic variation as it can
   be described by the VCF format,
 * and a collection of command-line utilities for executing complex
   manipulations on VCF files.

This package contains several tools using the library.

Andere aan libvcflib-tools gerelateerde pakketten

• dep: libc6 (>= 2.34)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libdisorder0 (>= 0.0.2)

  library for entropy measurement of byte streams

• dep: libfastahack0 (>= 0.0+git20160702.bbc645f) [amd64, arm64, mips64el, ppc64el]

  library for indexing and sequence extraction from FASTA files (lib)

  dep: libfastahack0 (>= 1.0.0+dfsg) [niet amd64, arm64, mips64el, ppc64el]

• dep: libgcc-s1 (>= 3.0) [niet armel, armhf, ppc64el]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4.4) [ppc64el]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libsmithwaterman0 (>= 0.0+git20160702.2610e25)

  determine similar regions between two strings or genomic sequences (lib)

• dep: libstdc++6 (>= 11)

  GNU Standard C++ Library v3

• dep: libtabixpp0 (>= 1.0.0)

  C++ wrapper to tabix indexer

• dep: libvcflib1 (>= 1.0.3+dfsg)

  C++ library for parsing and manipulating VCF files

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: r-base-core

  GNU R core of statistical computation and graphics system

• dep: r-cran-ggplot2

  implementation of the Grammar of Graphics

• dep: r-cran-gridbase

  GNU R Integration of base and grid graphics

• dep: r-cran-plyr

  tools for splitting, applying and combining data

• sug: r-cran-pracma

  practical numerical math functions for GNU R

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Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	730,3 kB	4.880,0 kB	[overzicht]
arm64	651,0 kB	6.692,0 kB	[overzicht]
armel	623,8 kB	6.603,0 kB	[overzicht]
armhf	641,6 kB	6.219,0 kB	[overzicht]
i386	759,9 kB	4.915,0 kB	[overzicht]
mips64el	645,8 kB	7.617,0 kB	[overzicht]
mipsel	650,6 kB	7.253,0 kB	[overzicht]
ppc64el	712,4 kB	7.716,0 kB	[overzicht]
s390x	652,4 kB	4.620,0 kB	[overzicht]