[ Source: spoa ]
Package: spoa (4.1.4-1)
Links for spoa
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External Resources:
- Homepage [github.com]
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SIMD partial order alignment tool
Spoa (SIMD POA) is a c++ implementation of the partial order alignment (POA) algorithm (as described in 10.1093/bioinformatics/18.3.452) which is used to generate consensus sequences (as described in 10.1093/bioinformatics/btg109). It supports three alignment modes: local (Smith-Waterman), global (Needleman-Wunsch) and semi-global alignment (overlap).
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Download spoa
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| alpha (unofficial port) | 35.9 kB | 98.0 kB | [list of files] |
| amd64 | 37.2 kB | 82.0 kB | [list of files] |
| arm64 | 36.0 kB | 98.0 kB | [list of files] |
| armel | 34.7 kB | 73.0 kB | [list of files] |
| armhf | 34.0 kB | 61.0 kB | [list of files] |
| hppa (unofficial port) | 37.7 kB | 82.0 kB | [list of files] |
| i386 | 37.8 kB | 77.0 kB | [list of files] |
| ia64 (unofficial port) | 41.3 kB | 106.0 kB | [list of files] |
| m68k (unofficial port) | 35.9 kB | 73.0 kB | [list of files] |
| mips64el | 36.3 kB | 100.0 kB | [list of files] |
| ppc64 (unofficial port) | 37.1 kB | 98.0 kB | [list of files] |
| ppc64el | 37.7 kB | 98.0 kB | [list of files] |
| riscv64 | 35.9 kB | 70.0 kB | [list of files] |
| s390x | 37.1 kB | 78.0 kB | [list of files] |
| sh4 (unofficial port) | 38.5 kB | 97.0 kB | [list of files] |
| sparc64 (unofficial port) | 34.8 kB | 1,060.0 kB | [list of files] |
| x32 (unofficial port) | 37.0 kB | 77.0 kB | [list of files] |