Package: sga (0.10.15-7 and others)

[ Source: sga  ]

de novo genome assembler that uses string graphs

The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads.

SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers' string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.

Other Packages Related to sga

• dep: libbamtools2.4.0 [hppa, ppc64, sparc64]

  Package not available

• dep: libbamtools2.5.1 [sh4]

  Package not available

• dep: libbamtools2.5.2 (>= 2.5.2+dfsg) [not hppa, ppc64, sh4, sparc64]

  dynamic library for manipulating BAM (genome alignment) files

• dep: libc6 (>= 2.23) [hppa, ppc64, sparc64]

  GNU C 라이브러리: 공유 라이브러리
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.27) [sh4]

  dep: libc6 (>= 2.34) [not alpha, hppa, ia64, ppc64, sh4, sparc64]

• dep: libc6.1 (>= 2.33) [ia64]

  GNU C 라이브러리: 공유 라이브러리
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.34) [alpha]

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, mips64el, ppc64el, x32]

  GCC 기능 지원 라이브러리

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [ia64]

  dep: libgcc-s1 (>= 7) [i386]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC 기능 지원 라이브러리

• dep: libgcc1 (>= 1:3.0) [ppc64]

  Package not available

  dep: libgcc1 (>= 1:3.4) [sh4, sparc64]

• dep: libgcc4 (>= 4.1.1) [hppa]

  Package not available

• dep: libgomp1 (>= 4.9) [hppa, ppc64, sh4, sparc64]

  GCC OpenMP (GOMP) 지원 라이브러리

  dep: libgomp1 (>= 6) [not hppa, ppc64, sh4, sparc64]

• dep: libstdc++6 (>= 11) [not alpha, hppa, ppc64, riscv64, sh4, sparc64]

  GNU 표준 C++ 라이브러리 v3

  dep: libstdc++6 (>= 13.1) [alpha, riscv64]

  dep: libstdc++6 (>= 5.2) [hppa, ppc64, sh4, sparc64]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: perl [not hppa, ppc64, sh4, sparc64]

  래리 월의 Practical Extraction and Report Language

• dep: python [hppa, ppc64, sh4, sparc64]

  Package not available

• dep: python-pysam [hppa, ppc64, sh4, sparc64]

  Package not available

• dep: python-ruffus [hppa, ppc64, sh4, sparc64]

  Package not available

• dep: python3 [not hppa, ppc64, sh4, sparc64]

  interactive high-level object-oriented language (default python3 version)

• dep: python3-pysam [not hppa, ppc64, sh4, sparc64]

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: python3-ruffus [not hppa, ppc64, sh4, sparc64]

  Python3 computation pipeline library widely used in bioinformatics

• dep: samtools

  SAM, BAM, CRAM 형식에서 시퀀스 정렬 처리

• dep: zlib1g (>= 1:1.1.4)

  압축 라이브러리 - 런타임

• rec: abyss [not sh4]

  짧은 읽기를 위한 de novo, 병렬, 시퀀스 어셈블러

  rec: abyss (>= 2.0.2-1) [sh4]

• sug: abyss (>= 1.5.2-2)

  짧은 읽기를 위한 de novo, 병렬, 시퀀스 어셈블러

Download sga

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	0.10.15-7	755.4 kB	2,753.0 kB	[list of files]
amd64	0.10.15-7+b1	812.5 kB	2,432.0 kB	[list of files]
arm64	0.10.15-7+b1	580.5 kB	1,792.0 kB	[list of files]
armel	0.10.15-7+b1	564.3 kB	1,727.0 kB	[list of files]
armhf	0.10.15-7+b1	582.9 kB	1,279.0 kB	[list of files]
hppa (unofficial port)	0.10.14-2	977.9 kB	2,993.0 kB	[list of files]
i386	0.10.15-7+b1	876.3 kB	2,607.0 kB	[list of files]
ia64 (unofficial port)	0.10.15-7+b1	1,025.2 kB	4,829.0 kB	[list of files]
m68k (unofficial port)	0.10.15-7+b1	775.3 kB	2,407.0 kB	[list of files]
mips64el	0.10.15-7+b1	745.3 kB	3,062.0 kB	[list of files]
ppc64 (unofficial port)	0.10.14-2	735.4 kB	2,620.0 kB	[list of files]
ppc64el	0.10.15-7+b1	692.6 kB	2,304.0 kB	[list of files]
riscv64	0.10.15-7+b1	663.5 kB	1,496.0 kB	[list of files]
sh4 (unofficial port)	0.10.15-4	1,052.2 kB	2,782.0 kB	[list of files]
sparc64 (unofficial port)	0.10.14-2	770.0 kB	2,627.0 kB	[list of files]
x32 (unofficial port)	0.10.15-7+b1	817.2 kB	2,291.0 kB	[list of files]