Package: blixem (4.44.1+dfsg-7.1 and others)

[ Source: seqtools  ]

interactive browser of sequence alignments

Blixem is an interactive browser of sequence alignments that have been stacked up in a "master-slave" multiple alignment; it is not a 'true' multiple alignment but a 'one-to-many' alignment.

 * Overview section showing the positions of genes and alignments around
   the alignment window
 * Detail section showing the actual alignment of protein or nucleotide
   sequences to the genomic DNA sequence.
 * View alignments against both strands of the reference sequence.
 * View sequences in nucleotide or protein mode; in protein mode, Blixem
   will display the three-frame translation of the reference sequence.
 * Residues are highlighted in different colours depending on whether
   they are an exact match, conserved substitution or mismatch.
 * Gapped alignments are supported, with insertions and deletions being
   highlighted in the match sequence.
 * Matches can be sorted and filtered.
 * SNPs and other variations can be highlighted in the reference
   sequence.
 * Poly(A) tails can be displayed and poly(A) signals highlighted in the
   reference sequence.

Tags: Interface Toolkit: GTK

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Download blixem

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	4.44.1+dfsg-7.1	1,327.0 kB	2,429.0 kB	[list of files]
amd64	4.44.1+dfsg-7.1+b1	1,347.5 kB	2,220.0 kB	[list of files]
arm64	4.44.1+dfsg-7.1+b1	1,314.2 kB	2,290.0 kB	[list of files]
armel	4.44.1+dfsg-7.1+b1	1,292.4 kB	2,060.0 kB	[list of files]
armhf	4.44.1+dfsg-7.1+b1	1,298.9 kB	1,820.0 kB	[list of files]
hppa (unofficial port)	4.44.1+dfsg-7.1	1,333.3 kB	2,197.0 kB	[list of files]
i386	4.44.1+dfsg-7.1+b1	1,360.8 kB	2,356.0 kB	[list of files]
ia64 (unofficial port)	4.44.1+dfsg-7.1	1,378.9 kB	3,243.0 kB	[list of files]
m68k (unofficial port)	4.44.1+dfsg-7.1	1,339.1 kB	2,245.0 kB	[list of files]
mips64el	4.44.1+dfsg-7.1+b1	1,340.2 kB	2,634.0 kB	[list of files]
ppc64 (unofficial port)	4.44.1+dfsg-7.1	1,346.7 kB	2,675.0 kB	[list of files]
ppc64el	4.44.1+dfsg-7.1+b1	1,346.5 kB	2,548.0 kB	[list of files]
riscv64	4.44.1+dfsg-7.1+b1	1,340.1 kB	2,020.0 kB	[list of files]
s390x	4.44.1+dfsg-7.1+b1	1,322.3 kB	2,266.0 kB	[list of files]
sh4 (unofficial port)	4.44.1+dfsg-7.1	1,361.6 kB	2,227.0 kB	[list of files]
sparc64 (unofficial port)	4.44.1+dfsg-7.1	1,295.2 kB	3,224.0 kB	[list of files]
x32 (unofficial port)	4.44.1+dfsg-7.1	1,348.7 kB	2,155.0 kB	[list of files]