Package: libfastahack0 (1.0.0+dfsg-11 and others)

[ Source: libfastahack  ]

library for indexing and sequence extraction from FASTA files (lib)

fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.

Features:

 * FASTA index (.fai) generation for FASTA files
 * Sequence extraction
 * Subsequence extraction
 * Sequence statistics (currently only entropy is provided)

Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence.

This package contains the dynamic library.

Tags: Role: Shared Library

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Download libfastahack0

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.0.0+dfsg-11	23.7 kB	82.0 kB	[list of files]
amd64	1.0.0+dfsg-11	26.6 kB	87.0 kB	[list of files]
arm64	1.0.0+dfsg-11	23.7 kB	87.0 kB	[list of files]
armel	1.0.0+dfsg-11	23.0 kB	69.0 kB	[list of files]
armhf	1.0.0+dfsg-11	23.2 kB	57.0 kB	[list of files]
hppa (unofficial port)	1.0.0+dfsg-11	27.6 kB	78.0 kB	[list of files]
i386	1.0.0+dfsg-11	27.7 kB	81.0 kB	[list of files]
ia64 (unofficial port)	1.0.0+dfsg-11	30.7 kB	117.0 kB	[list of files]
m68k (unofficial port)	1.0.0+dfsg-11	25.1 kB	73.0 kB	[list of files]
mips64el	1.0.0+dfsg-11	24.4 kB	90.0 kB	[list of files]
ppc64 (unofficial port)	1.0.0+dfsg-11	26.4 kB	145.0 kB	[list of files]
ppc64el	1.0.0+dfsg-11	26.7 kB	87.0 kB	[list of files]
riscv64	1.0.0+dfsg-11+b1	24.8 kB	66.0 kB	[list of files]
s390x	1.0.0+dfsg-11	25.0 kB	77.0 kB	[list of files]
sh4 (unofficial port)	1.0.0+dfsg-11	27.9 kB	81.0 kB	[list of files]
sparc64 (unofficial port)	1.0.0+dfsg-11	22.1 kB	1,051.0 kB	[list of files]
x32 (unofficial port)	1.0.0+dfsg-11	25.5 kB	69.0 kB	[list of files]