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Package: tree-puzzle (5.2-7 and others)

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Reconstruction of phylogenetic trees by maximum likelihood

TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Supports Format: Plain Text, Works with: Need an extra tag

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Download for all available architectures
Architecture Version Package Size Installed Size Files
amd64 5.2-7+b1 146.1 kB328.0 kB [list of files]
armel 5.2-7+b1 154.6 kB339.0 kB [list of files]
armhf 5.2-7+b1 115.0 kB259.0 kB [list of files]
i386 5.2-7+b1 115.1 kB268.0 kB [list of files]
mips 5.2-7 123.4 kB365.0 kB [list of files]
mipsel 5.2-7 124.8 kB365.0 kB [list of files]
powerpc 5.2-7+b1 144.3 kB311.0 kB [list of files]
ppc64el 5.2-7 126.1 kB308.0 kB [list of files]