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[ Source: tophat  ]

Package: tophat (2.0.13+dfsg-1)

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fast splice junction mapper for RNA-Seq reads

TopHat aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons. TopHat is a collaborative effort between the University of Maryland Center for Bioinformatics and Computational Biology and the University of California, Berkeley Departments of Mathematics and Molecular and Cell Biology.

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Download tophat

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 699.9 kB3,881.0 kB [list of files]