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[ Source: samtools  ]

Package: samtools (0.1.19-1)

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processing sequence alignments in SAM and BAM formats

Samtools is a set of utilities that manipulate nucleotide sequence alignments in the binary BAM format. It imports from and exports to the ascii SAM (Sequence Alignment/Map) format, does sorting, merging and indexing, and allows to retrieve reads in any regions swiftly. It is designed to work on a stream, and is able to open a BAM (not SAM) file on a remote FTP or HTTP server.

Tags: Field: Biology, Implemented in: C, User Interface: interface::commandline, network::client, Network Protocol: FTP, HTTP, Role: role::program, scope::utility, Interface Toolkit: Ncurses TUI, Purpose: Analysing, use::calculating, use::filtering, Works with: Biological Sequence

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Download for all available architectures
Architecture Package Size Installed Size Files
amd64 549.8 kB1,262.0 kB [list of files]
armhf 519.3 kB1,047.0 kB [list of files]
i386 551.3 kB1,351.0 kB [list of files]