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[ Source: sigma-align  ]

Package: sigma-align (1.1.3-3)

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Simple greedy multiple alignment of non-coding DNA sequences

Sigma (“Simple greedy multiple alignment”) is an alignment program. It's algorithm and scoring scheme are designed specifically for non-coding DNA sequence.

It uses a strategy of seeking the best possible gapless local alignments. This happens at each step making the best possible alignment consistent with existing alignments. It scores the significance of the alignment based on the lengths of the aligned fragments and a background model. These may be supplied or estimated from an auxiliary file of intergenic DNA.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Supports Format: Plain Text, Works with: Need an extra tag

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Architecture Package Size Installed Size Files
amd64 25.3 kB80.0 kB [list of files]
armel 25.4 kB78.0 kB [list of files]
armhf 22.1 kB69.0 kB [list of files]
i386 24.0 kB77.0 kB [list of files]
ia64 35.0 kB75.0 kB [list of files]
kfreebsd-amd64 25.4 kB49.0 kB [list of files]
kfreebsd-i386 24.0 kB45.0 kB [list of files]
mips 24.9 kB79.0 kB [list of files]
mipsel 24.5 kB79.0 kB [list of files]
powerpc 24.4 kB77.0 kB [list of files]
s390 25.3 kB77.0 kB [list of files]
s390x 25.7 kB84.0 kB [list of files]
sparc 22.8 kB74.0 kB [list of files]