[ ソース: r-cran-alakazam ]
パッケージ: r-cran-alakazam (1.3.0-1)
r-cran-alakazam に関するリンク
Debian の資源:
r-cran-alakazam ソースパッケージをダウンロード:
- [r-cran-alakazam_1.3.0-1.dsc]
- [r-cran-alakazam_1.3.0.orig.tar.gz]
- [r-cran-alakazam_1.3.0-1.debian.tar.xz]
メンテナ:
外部の資源:
- ホームページ [cran.r-project.org]
類似のパッケージ:
Immunoglobulin Clonal Lineage and Diversity Analysis
Alakazam is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq) and provides a set of tools to investigate lymphocyte receptor clonal lineages, diversity, gene usage, and other repertoire level properties, with a focus on high-throughput immunoglobulin (Ig) sequencing.
Alakazam serves five main purposes:
* Providing core functionality for other R packages in the Immcantation framework. This includes common tasks such as file I/O, basic DNA sequence manipulation, and interacting with V(D)J segment and gene annotations. * Providing an R interface for interacting with the output of the pRESTO and Change-O tool suites. * Performing lineage reconstruction on clonal populations of Ig sequences and analyzing the topology of the resultant lineage trees. * Performing clonal abundance and diversity analysis on lymphocyte repertoires. * Performing physicochemical property analyses of lymphocyte receptor sequences.
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