[ ソース: trnascan-se ]
パッケージ: trnascan-se (2.0.12+ds-1) [non-free]
trnascan-se に関するリンク
Debian の資源:
trnascan-se ソースパッケージをダウンロード:
- [trnascan-se_2.0.12+ds-1.dsc]
- [trnascan-se_2.0.12+ds.orig.tar.gz]
- [trnascan-se_2.0.12+ds-1.debian.tar.xz]
メンテナ:
外部の資源:
- ホームページ [lowelab.ucsc.edu]
類似のパッケージ:
detection of transfer RNA genes in genomic sequence
tRNAscan-SE identifies 99-100% of transfer RNA genes in DNA sequence while giving less than one false positive per 15 gigabases. Two previously described tRNA detection programs are used as fast, first-pass prefilters to identify candidate tRNAs, which are then analyzed by a highly selective tRNA covariance model. This work represents a practical application of RNA covariance models, which are general, probabilistic secondary structure profiles based on stochastic context-free grammars. tRNAscan-SE searches at ~ 30 000 bp/s. Additional extensions to tRNAscan-SE detect unusual tRNA homologues such as selenocysteine tRNAs, tRNA-derived repetitive elements and tRNA pseudogenes.
その他の trnascan-se 関連パッケージ
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- dep: infernal
- inference of RNA secondary structural alignments
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- dep: libc6 (>= 2.34)
- GNU C ライブラリ: 共有ライブラリ
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
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- dep: perl
- Larry Wall 作の実用的な抽出とレポート用の言語
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- dep: trnascan-se-common (= 2.0.12+ds-1)
- detection of transfer RNA genes in genomic sequence (common files)