パッケージ: q2-dada2 (2024.2.0-1)
QIIME 2 plugin to work with adapters in sequence data
QIIME 2 is a powerful, extensible, and decentralized microbiome analysis package with a focus on data and analysis transparency. QIIME 2 enables researchers to start an analysis with raw DNA sequence data and finish with publication-quality figures and statistical results. Key features:
* Integrated and automatic tracking of data provenance * Semantic type system * Plugin system for extending microbiome analysis functionality * Support for multiple types of user interfaces (e.g. API, command line,graphical)
QIIME 2 is a complete redesign and rewrite of the QIIME 1 microbiome analysis pipeline. QIIME 2 will address many of the limitations of QIIME 1, while retaining the features that makes QIIME 1 a powerful and widely-used analysis pipeline.
QIIME 2 currently supports an initial end-to-end microbiome analysis pipeline. New functionality will regularly become available through QIIME 2 plugins. You can view a list of plugins that are currently available on the QIIME 2 plugin availability page. The future plugins page lists plugins that are being developed.
This package wraps the dada2 R package in BioConductor for modeling and correcting Illumina-sequenced amplicon errors. This was shown to improve the sensitivity of diversity analyses.
その他の q2-dada2 関連パッケージ
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- dep: python3
- 対話式の高レベルオブジェクト指向言語 (デフォルト python3 バージョン)
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- dep: python3-biom-format
- Biological Observation Matrix (BIOM) format (Python 3)
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- dep: python3-skbio
- Python3 data structures, algorithms, educational resources for bioinformatic
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- dep: q2-types (>= 2024.2)
- QIIME 2 plugin defining types for microbiome analysis
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- dep: qiime (>= 2024.2)
- Quantitative Insights Into Microbial Ecology
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- dep: r-base-core
- GNU R core of statistical computation and graphics system
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- dep: r-bioc-dada2 (>= 1.24.0+dfsg-2~)
- sample inference from amplicon sequencing data
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- dep: r-cran-optparse
- GNU/R Command line option parser