[ ソース: flye ]
パッケージ: flye (2.9.4+dfsg-1)
de novo assembler for single molecule sequencing reads using repeat graphs
Flye is a de novo assembler for single molecule sequencing reads, such as those produced by PacBio and Oxford Nanopore Technologies. It is designed for a wide range of datasets, from small bacterial projects to large mammalian-scale assemblies. The package represents a complete pipeline: it takes raw PacBio / ONT reads as input and outputs polished contigs. Flye also has a special mode for metagenome assembly.
その他の flye 関連パッケージ
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- dep: libc6 (>= 2.38)
- GNU C ライブラリ: 共有ライブラリ
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
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- dep: libgcc-s1 (>= 3.0)
- GCC 共有ライブラリ
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- dep: libstdc++6 (>= 13.1)
- GNU 標準 C++ ライブラリ v3
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- dep: minimap2
- versatile pairwise aligner for genomic and spliced nucleotide sequences
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- dep: python3
- 対話式の高レベルオブジェクト指向言語 (デフォルト python3 バージョン)
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- dep: python3-six
- Python 2 and 3 compatibility library
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- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- dep: zlib1g (>= 1:1.1.4)
- 圧縮ライブラリ - ランタイム