[ ソース: velvet ]
パッケージ: velvet-long (1.2.10+dfsg1-8)
Nucleic acid sequence assembler for very short reads, long version
Velvet is a de novo genomic assembler specially designed for short read sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino and Ewan Birney at the European Bioinformatics Institute (EMBL-EBI), near Cambridge, in the United Kingdom.
Velvet currently takes in short read sequences, removes errors then produces high quality unique contigs. It then uses paired read information, if available, to retrieve the repeated areas between contigs.
This package installs special long-mode versions of Velvet, as recommended in the Velvet tutorials.
その他の velvet-long 関連パッケージ
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- dep: libc6 (>= 2.34)
- GNU C ライブラリ: 共有ライブラリ
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
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- dep: libgomp1 (>= 4.9)
- GCC OpenMP (GOMP) サポートライブラリ
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- dep: velvet
- 非常に短いリード用塩基配列アセンブラ
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- dep: zlib1g (>= 1:1.2.0.2)
- 圧縮ライブラリ - ランタイム