[ ソース: megadepth ]
パッケージ: megadepth (1.2.0-4 など)
computes coverage from BigWig and BAM sequencing files
A major concern for the interpretation of DNA and RNA (!) sequencing is the number of reads that cover a particular area. This package has interesting statistics for the distinction of coding and non-coding parts of the genome and knows how to interpret transcripts that span multiple exons.
This package is a successor of the program 'bamcount'.
その他の megadepth 関連パッケージ
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- dep: libbigwig0t64 (>= 0.4.6)
- C library for handling bigWig files
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- dep: libc6 (>= 2.34)
- GNU C ライブラリ: 共有ライブラリ
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
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- dep: libgcc-s1 (>= 4.2)
- GCC 共有ライブラリ
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- dep: libhts3t64 (>= 1.17)
- C library for high-throughput sequencing data formats
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- dep: libstdc++6 (>= 13.1)
- GNU 標準 C++ ライブラリ v3
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- sug: r-bioc-megadepth
- BioCOnductor BigWig and BAM related utilities