パッケージ: r-bioc-genomicalignments (1.38.2-1) [debports]
r-bioc-genomicalignments に関するリンク
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ソースパッケージをダウンロード:
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外部の資源:
- ホームページ [bioconductor.org]
類似のパッケージ:
BioConductor representation and manipulation of short genomic alignments
This BioConductor package provides efficient containers for storing and manipulating short genomic alignments (typically obtained by aligning short reads to a reference genome). This includes read counting, computing the coverage, junction detection, and working with the nucleotide content of the alignments.
その他の r-bioc-genomicalignments 関連パッケージ
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- dep: libc6 (>= 2.3)
- GNU C ライブラリ: 共有ライブラリ
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
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- dep: r-api-4.0
- 以下のパッケージによって提供される仮想パッケージです: r-base-core
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- dep: r-api-bioc-3.18
- 以下のパッケージによって提供される仮想パッケージです: r-bioc-biocgenerics
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- dep: r-bioc-biocgenerics (>= 0.37.0)
- generic functions for Bioconductor
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- dep: r-bioc-biocparallel
- BioConductor facilities for parallel evaluation
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- dep: r-bioc-biostrings (>= 2.55.7)
- GNU R string objects representing biological sequences
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- dep: r-bioc-genomeinfodb (>= 1.13.1)
- BioConductor utilities for manipulating chromosome identifiers
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- dep: r-bioc-genomicranges (>= 1.41.5)
- BioConductor representation and manipulation of genomic intervals
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- dep: r-bioc-iranges (>= 2.23.9)
- GNU R low-level containers for storing sets of integer ranges
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- dep: r-bioc-rsamtools (>= 1.31.2)
- GNU R binary alignment (BAM), variant call (BCF), or tabix file import
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- dep: r-bioc-s4vectors (>= 0.27.12)
- BioConductor S4 implementation of vectors and lists
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- dep: r-bioc-summarizedexperiment (>= 1.9.13)
- BioConductor assay container
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- sug: r-bioc-biocstyle
- standard styles for vignettes and other Bioconductor documents
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- sug: r-bioc-bsgenome
- BioConductor infrastructure for Biostrings-based genome data packages
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- sug: r-bioc-deseq2
- R package for RNA-Seq Differential Expression Analysis
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- sug: r-bioc-edger
- Empirical analysis of digital gene expression data in R
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- sug: r-bioc-genomicfeatures
- GNU R tools for making and manipulating transcript centric annotations
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- sug: r-bioc-rtracklayer
- GNU R interface to genome browsers and their annotation tracks
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- sug: r-bioc-shortread
- GNU R classes and methods for high-throughput short-read sequencing data
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- sug: r-cran-runit
- GNU R package providing unit testing framework