パッケージ: libjellyfish-2.0-dev (2.3.1-2 など) [debports]
libjellyfish-2.0-dev に関するリンク
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count k-mers in DNA sequences (development files of jellyfish)
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.
This package contains the development files (static library and header files)
その他の libjellyfish-2.0-dev 関連パッケージ
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- dep: libjellyfish-2.0-2 (= 2.3.1-2+b1)
- count k-mers in DNA sequences (dynamic library of jellyfish)