パッケージ: r-bioc-purecn (2.8.1+dfsg-1)

[ ソース: r-bioc-purecn  ]

copy number calling and SNV classification using targeted short read sequencing

This package estimates tumor purity, copy number, and loss of heterozygosity (LOH), and classifies single nucleotide variants (SNVs) by somatic status and clonality. PureCN is designed for targeted short read sequencing data, integrates well with standard somatic variant detection and copy number pipelines, and has support for tumor samples without matching normal samples.

その他の r-bioc-purecn 関連パッケージ

• dep: r-api-4.0

  以下のパッケージによって提供される仮想パッケージです: r-base-core

• dep: r-api-bioc-3.18

  以下のパッケージによって提供される仮想パッケージです: r-bioc-biocgenerics

• dep: r-bioc-biobase

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• dep: r-bioc-biocgenerics

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• dep: r-bioc-biostrings

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• dep: r-bioc-dnacopy

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• dep: r-bioc-genomeinfodb

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• dep: r-bioc-genomicranges (>= 1.20.3)

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• dep: r-bioc-iranges (>= 2.2.1)

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• dep: r-bioc-rhdf5

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• dep: r-bioc-rsamtools

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• dep: r-bioc-rtracklayer

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• dep: r-bioc-s4vectors

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-summarizedexperiment

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• dep: r-bioc-variantannotation (>= 1.14.1)

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• dep: r-cran-futile.logger

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• dep: r-cran-ggplot2

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• dep: r-cran-gridextra

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• dep: r-cran-matrix

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• dep: r-cran-mclust

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• dep: r-cran-rcolorbrewer

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• dep: r-cran-vgam

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• sug: r-bioc-biocparallel

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• sug: r-bioc-biocstyle

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• sug: r-bioc-org.hs.eg.db

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• sug: r-cran-covr

  test coverage for GNU R packages

• sug: r-cran-jsonlite

  Robust, High Performance JSON Parser and Generator for R

• sug: r-cran-knitr

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• sug: r-cran-markdown

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• sug: r-cran-optparse

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• sug: r-cran-r.utils

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• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• sug: r-cran-testthat

  GNU R testsuite

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