パッケージ: predictprotein (1.1.08-1)

[ ソース: predictprotein  ]

suite of protein sequence analysis tools

PredictProtein is a sequence analysis suite providing prediction of protein structure and function.

PredictProtein takes a protein sequence as input and provides the following per-residue, or whole protein annotations:

 * secondary structure
 * solvent accessibility
 * multiple sequence alignments
 * PROSITE sequence motifs
 * low-complexity regions
 * nuclear localisation signals
 * regions lacking regular structure (NORS)
 * unstructured loops
 * transmembrane helices
 * transmembrane beta barrels
 * coiled-coil regions
 * disulfide-bonds
 * disordered regions
 * B-value flexibility
 * protein-protein interaction sites
 * Gene Ontology terms

その他の predictprotein 関連パッケージ

• dep: bioperl

  Perl tools for computational molecular biology

• dep: blast2

  transitional dummy package to ncbi-blast+-legacy

• dep: disulfinder

  cysteines disulfide bonding state and connectivity predictor

• dep: hmmer

  タンパク質配列解析用のプロファイル隠れマルコフモデル

• dep: hmmer2

  タンパク質配列解析用のプロファイル隠れマルコフモデル

• dep: librg-exception-perl

  RG::Exception Perl module

• dep: librg-utils-perl

  parsers and format conversion utilities used by (e.g.) profphd

• dep: make

  コンパイルを制御するユーティリティ

• dep: metastudent

  predictor of Gene Ontology terms from protein sequence

• dep: ncbi-seg

  tool to mask segments of low compositional complexity in amino acid sequences

• dep: ncoils

  coiled coil secondary structure prediction

• dep: norsnet

  tool to identify unstructured loops in proteins

• dep: norsp

  predictor of non-regular secondary structure

• dep: perl

  Larry Wall 作の実用的な抽出とレポート用の言語

• dep: predictnls

  prediction and analysis of protein nuclear localization signals

• dep: profbval

  predictor of flexible/rigid protein residues from sequence

• dep: profisis

  prediction of protein-protein interaction sites from sequence

• dep: profphd

  secondary structure and solvent accessibility predictor

• dep: proftmb

  per-residue prediction of bacterial transmembrane beta barrels

• dep: reprof

  protein secondary structure and accessibility predictor

• sug: pp-cache-mgr (>= 1.0.3)

  パッケージは利用できません

• sug: pp-popularity-contest

  PredictProtein popularity contest

• sug: predictprotein-nonfree

  パッケージは利用できません

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