[ ソース: plasmidid ]
パッケージ: plasmidid (1.6.3+dfsg-3)
plasmidid に関するリンク
Debian の資源:
plasmidid ソースパッケージをダウンロード:
- [plasmidid_1.6.3+dfsg-3.dsc]
- [plasmidid_1.6.3+dfsg.orig.tar.xz]
- [plasmidid_1.6.3+dfsg-3.debian.tar.xz]
メンテナ:
外部の資源:
- ホームページ [github.com]
類似のパッケージ:
mapping-based, assembly-assisted plasmid identification tool
PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification.
PlasmidID is a computational pipeline that maps Illumina reads over plasmid database sequences. The k-mer filtered, most covered sequences are clustered by identity to avoid redundancy and the longest are used as scaffold for plasmid reconstruction. Reads are assembled and annotated by automatic and specific annotation. All information generated from mapping, assembly, annotation and local alignment analyses is gathered and accurately represented in a circular image which allow user to determine plasmidic composition in any bacterial sample.
その他の plasmidid 関連パッケージ
|
|
|
|
-
- dep: bedtools
- suite of utilities for comparing genomic features
-
- dep: bowtie2
- ultrafast memory-efficient short read aligner
-
- dep: cd-hit
- suite of programs designed to quickly group sequences
-
- dep: circos
- データ可視化用プロット作成ツール
-
- dep: mash
- fast genome and metagenome distance estimation using MinHash
-
- dep: ncbi-blast+
- next generation suite of BLAST sequence search tools
-
- dep: prokka
- rapid annotation of prokaryotic genomes
-
- dep: python3
- 対話式の高レベルオブジェクト指向言語 (デフォルト python3 バージョン)
-
- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
-
- rec: python3-biopython
- Python3 library for bioinformatics
-
- rec: python3-numpy
- Fast array facility to the Python 3 language
-
- rec: python3-pandas
- data structures for "relational" or "labeled" data
-
- rec: spades
- genome assembler for single-cell and isolates data sets
-
- rec: trimmomatic
- flexible read trimming tool for Illumina NGS data