パッケージ: jellyfish-examples (2.3.0-10)
jellyfish-examples に関するリンク
Debian の資源:
jellyfish ソースパッケージをダウンロード:
メンテナ:
- Debian Med Packaging Team (QA ページ, メールアーカイブ)
- Shaun Jackman (QA ページ)
- Andreas Tille (QA ページ)
- Michael R. Crusoe (QA ページ)
外部の資源:
- ホームページ [www.cbcb.umd.edu]
類似のパッケージ:
count k-mers in DNA sequences (examples for testing)
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.
This package contains examples to test the package