[ ソース: kleborate ]
パッケージ: kleborate (2.0.1-1)
tool to screen Klebsiella genome assemblies
Kleborate is a tool to screen Klebsiella genome assemblies for:
* MLST sequence type * species (e.g. K. pneumoniae, K. quasipneumoniae, K. variicola, etc.) * ICEKp associated virulence loci: yersiniabactin (ybt), colibactin (clb) * virulence plasmid associated loci: salmochelin (iro), aerobactin (iuc), hypermucoidy (rmpA, rmpA2) * antimicrobial resistance genes, including quinolone resistance SNPs and colistin resistance truncations * K (capsule) and O antigen (LPS) serotype prediction, via wzi alleles and Kaptive
その他の kleborate 関連パッケージ
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- dep: kaptive
- obtain information about K and O types for Klebsiella genome assemblies
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- dep: kaptive-data
- reference data for kaptive for Klebsiella genome assemblies
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- dep: mash
- fast genome and metagenome distance estimation using MinHash
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- dep: ncbi-blast+
- next generation suite of BLAST sequence search tools
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- dep: python3
- 対話式の高レベルオブジェクト指向言語 (デフォルト python3 バージョン)
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- dep: python3-biopython
- Python3 library for bioinformatics
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- dep: python3-distutils
- distutils package for Python 3.x