パッケージ: examl (3.0.22-1 など)
Exascale Maximum Likelihood (ExaML) code for phylogenetic inference
Exascale Maximum Likelihood (ExaML) is a code for phylogenetic inference using MPI. This code implements the popular RAxML search algorithm for maximum likelihood based inference of phylogenetic trees.
ExaML is a strapped-down light-weight version of RAxML for phylogenetic inference on huge datasets. It can only execute some very basic functions and is intended for computer-savvy users that can write little perl-scripts and have experience using queue submission scripts for clusters. ExaML only implements the CAT and GAMMA models of rate heterogeneity for binary, DNA, and protein data.
ExaML uses a radically new MPI parallelization approach that yields improved parallel efficiency, in particular on partitioned multi-gene or whole-genome datasets. It also implements a new load balancing algorithm that yields better parallel efficiency.
It is up to 4 times faster than its predecessor RAxML-Light and scales to a larger number of processors.
その他の examl 関連パッケージ
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- dep: libc6 (>= 2.29)
- GNU C ライブラリ: 共有ライブラリ
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
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- dep: libopenmpi3 (>= 4.1.0)
- high performance message passing library -- shared library
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- dep: openmpi-bin
- high performance message passing library -- binaries
examl のダウンロード
| アーキテクチャ | バージョン | パッケージサイズ | インストールサイズ | ファイル |
|---|---|---|---|---|
| amd64 | 3.0.22-1+b4 | 905.5 kB | 5,858.0 kB | [ファイル一覧] |
| arm64 | 3.0.22-1+b4 | 780.4 kB | 1,540.0 kB | [ファイル一覧] |
| armel | 3.0.22-1+b4 | 797.5 kB | 1,873.0 kB | [ファイル一覧] |
| armhf | 3.0.22-1+b4 | 786.2 kB | 1,513.0 kB | [ファイル一覧] |
| i386 | 3.0.22-1+b4 | 1,084.5 kB | 7,220.0 kB | [ファイル一覧] |
| mips64el | 3.0.22-1+b4 | 817.0 kB | 1,764.0 kB | [ファイル一覧] |
| mipsel | 3.0.22-1+b4 | 830.1 kB | 1,822.0 kB | [ファイル一覧] |
| ppc64el | 3.0.22-1+b4 | 833.7 kB | 1,792.0 kB | [ファイル一覧] |
| s390x | 3.0.22-1+b4 | 816.0 kB | 2,004.0 kB | [ファイル一覧] |