Package: phybin (0.3-6 and others)

[ Source: phybin  ]

binning/clustering newick trees by topology

PhyBin is a simple command line tool that classifies a set of Newick tree files by their topology. The purpose of it is to take a large set of tree files and browse through the most common tree topologies.

It can do simple binning of identical trees or more complex clustering based on an all-to-all Robinson-Foulds distance matrix.

phybin produces output files that characterize the size and contents of each bin or cluster (including generating GraphViz-based visual representations of the tree topologies).

Other Packages Related to phybin

• dep: libatomic1 (>= 4.8) [armel, m68k]

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• dep: libc6 (>= 2.29) [x32]

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  dep: libc6 (>= 2.34) [not ia64, x32]

• dep: libc6.1 (>= 2.36) [ia64]

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• dep: libffi8 (>= 3.4)

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• dep: libgmp10 (>= 2:6.2.1+dfsg1) [not riscv64, x32]

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Download phybin

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
amd64	0.3-6	1,614.5 kB	11,976.0 kB	[list of files]
arm64	0.3-6	4,125.4 kB	30,322.0 kB	[list of files]
armel	0.3-6	4,407.2 kB	28,552.0 kB	[list of files]
armhf	0.3-6	4,444.7 kB	28,524.0 kB	[list of files]
hppa (unofficial port)	0.3-6	4,884.4 kB	57,349.0 kB	[list of files]
i386	0.3-6	4,957.4 kB	37,630.0 kB	[list of files]
ia64 (unofficial port)	0.3-6	6,913.7 kB	182,517.0 kB	[list of files]
m68k (unofficial port)	0.3-6	3,207.8 kB	33,307.0 kB	[list of files]
mips64el	0.3-6	5,284.0 kB	58,772.0 kB	[list of files]
ppc64 (unofficial port)	0.3-6	3,407.6 kB	45,840.0 kB	[list of files]
ppc64el	0.3-6	3,498.6 kB	38,137.0 kB	[list of files]
riscv64	0.3-6+b1	4,531.3 kB	31,537.0 kB	[list of files]
s390x	0.3-6	7,543.2 kB	53,627.0 kB	[list of files]
sparc64 (unofficial port)	0.3-6	4,193.3 kB	74,794.0 kB	[list of files]
x32 (unofficial port)	0.3-5+b1	9,291.3 kB	38,282.0 kB	[list of files]